Georeactor Blog
Subcategory: bioseries
A prototype pangenome LLM (TomatoTomato)
September 26, 2025
Bio + LLM thoughts
March 18, 2025
Earthy Plant Papers #2
February 24, 2025
Earthy Plant Papers #1
December 2, 2024
Listing 'Plant-based LLMs'
November 27, 2024
AFK Post
September 10, 2024
Quantizing Evo?
August 20, 2024
AFK Post
August 4, 2024
books, bio LLMs, random links
Plants Probably Don't Have Eyes
July 23, 2024
on the Plant Neurobiology Society and PubMed
Genome browser on Netlify
June 7, 2024
Quinoa news + genome browser
June 4, 2024
Code and a call with jBrowse
LLaMA 3 now with Nucleotide BioTokens
May 13, 2024
Possible insight with a better LoRA
Gene annotation corpora #2
May 11, 2024
GrainGenes web search and apocrypha
LLaMA 3 and Nucleotide-level Tasks
May 7, 2024
Trying out new models
Starting Tiny with Protein LLaMA
April 22, 2024
Deep Sea Vent Deep Dive
April 10, 2024
Preparing the quinoa ML model
March 31, 2024
A recipe and a dive into polyploidy
Protein similarity Matryoshka Embeddings
March 27, 2024
Gene annotation corpora
March 17, 2024
UniProt
Matryoshka Embeddings?
March 14, 2024
Search on long sequences
HyenaDNA, scGPT, and Mamba in CoLab
January 24, 2024
Alternatives to AgroNT
You Wouldn't Download a Quinoa
January 20, 2024
AgroNT and plant genomes
Trying out a Plant DNA LLM
January 14, 2024
AgroNT
Revisiting the Cryptic Lineages
January 4, 2024
Resolving an epidemiology mystery from 2022